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Guided Diffusion Tensor Tractography with GTRACT: A Validation Study
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A novel fiber tracking algorithm (GTRACT) was developed to enhance tracking through ambiguous regions where cross fibers, fiber merging or fanning may be occurring. The software was developed using several cross platform open-source toolkits (ITK, VTK, and [...]

A Fast Approximation to the Bilateral Filter for ITK
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This document describes an implementation of an alternative bilateral filtering algorithm in ITK. This class implements the fast bilateral filter algorithm in ITK by taking the input image and organizing it into the required data structure as an ITK Image [...]

MITK and 3DMed : An Integrated Platform Applicable for the Development of Computer Assisted Intervention Systems
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This paper introduces an integrated 3D medical image processing and analyzing software platform which is open interface and freely available. The platform consists of the Medical Imaging Toolkit (MITK) and the 3-Dimensional Medical Image Processing [...]

Contrast Enhancement for Liver Tumor Identification
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In CT images, tumors located in a liver are generally identified by intensity difference between tumor and liver. The intensity of the tumor can be lower and or higher than that of the liver. However, the main problem of liver tumor detection from is related [...]

Applying Image Mining to Support Gestational Age Determination
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The gestational age (GA) determination is one of the most used measures to guide diagnostics of specialists in neonatology to guarantee the newborn surveillance. However, the currently available methods have been subject to a number of evaluations and [...]

Automated high-throughput registration for localizing 3D mouse brain gene expression using ITK
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The Allen Brain Atlas (ABA) project aims to create a cellular-resolution, genome-wide map of gene expression in the adult mouse brain. The resulting in situ hybridization (ISH) image data will be available free-of-charge to the public. Additionally, we [...]

Iterative Smoothing of Field Data in Spherical Meshes
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This document describes a contribution to the Insight Toolkit intended to smooth the values of Field data associated with the nodes of a Spherical Mesh. The Mesh Smoothing filters contributed here do not modify the geometry or the topology of the Mesh. They [...]

A programming environment for the development of modular 3D biomedical image processing applications
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ImageLib is a free object-oriented development environment destined to biomedical image processing. The software package contains a programming library (C++ language) and an MDI user interface (kernel). The major interest is to allow the creation of fully [...]

An open, clinically-validated database of 3D+t cine-MR images of the left ventricle with associated manual and automated segmentation
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In this paper, we describe a database of cine-MR (3D+t) images of the left ventricle. This database contains the voxel data, one automated and two manual segmentations for each sequence of images. The segmentations are validated from a clinical point of [...]


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