Non-rigid Groupwise Registration using B-Spline Deformation Model
In this work, we extend a previously demonstrated entropy based groupwise registration method to include a non-rigid deformation model based on B-splines. We describe an open source implementation of the groupwise registration algorithm using the [...]

Segmenting the Left Ventricle in 3D Using a Coupled ASM and a Learned Non-Rigid Spatial Model
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This paper presents a new approach to higher dimensional segmentation. We present an extended Active Shape Model (ASM) formulation for the segmentation of multi-contour anatomical structures. We employ coupling and weighting schemes to improve the robustness [...]

Incorporating Metric Flows and Sparse Jacobian Transformations in ITK
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Various metrics have been proposed in the literature for performing intrinsic automatic image to image registration. Among these measures, mutual information is a very popular one because of its robustness and accuracy for a wide variety of applications. In [...]

An ITK Implementation of Physics-based Non-rigid Registration Method
As part of the ITK v4 project efforts, we have developed ITK filters for physics-based non-rigid registration (PBNRR), which satisfies the following requirements: account for tissue properties in the registration, improve accuracy compared to rigid [...]

Multiple Sclerosis Detection in Multispectral Magnetic Resonance Images with Principal Components Analysis.
This paper presents a local feature vector based method for automated Multiple Sclerosis (MS) lesion segmentation of multi spectral MRI data. Twenty datasets from MS patients with FLAIR, T1,T2, MD and FA data with expert annotations are available as training [...]

Active Contour-Based Segmentation of Head and Neck with Adaptive Atlas Selection
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This paper presents automated segmentation of structures in the Head and Neck (H&N) region, using an active contour-based joint registration and segmentation model. A new atlas selection strategy is also used. Segmentation is performed based on the dense [...]

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