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BioImage Suite: An integrated medical image analysis suite
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BioImage Suite is an integrated image analysis software suite developed at Yale. It uses a combination of C++ and Tcl in the same fashion as that pioneered by the Visualization Toolkit (VTK) and it leverages both VTK and the Insight Toolkit. It has [...]

Cerebral Cortical Thickness Estimation using the TINA
  Open-Source Image Analysis Environment
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This paper gives an overview of the use and development of the TINA open-source medical image analysis environment, with respect to the determination of human cerebral cortical thickness estimation from magnetic resonance images. The ultimate aim of TINA is [...]

The NLM-Mayo Image Collection: Common Access to Uncommon Data
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For over two decades, the National Library of Medicine (NLM) has provided support for the collection of biomedical image data for use throughout the biomedical image, visualization and analysis community. Data collected during the Visible Human Project has [...]

Next Generation of the JAVA Image Science Toolkit (JIST) Visualization and Validation
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Modern medical imaging analyses often involve the concatenation of multiple steps, and neuroimaging analysis is no exception. The Java Image Science Toolkit (JIST) has provided a framework for both end users and engineers to synthesize processing modules into [...]

I-DO: A Deformable Organisms framework for ITK
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Medical image analysis is an important problem relating to the study of various diseases. Since their inception to MICCAI in 2001, ''deformable organisms'' have emerged as a fruitful methodology with examples ranging from 2D corpus callosum segmentation [...]

MITK and 3DMed : An Integrated Platform Applicable for the Development of Computer Assisted Intervention Systems
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This paper introduces an integrated 3D medical image processing and analyzing software platform which is open interface and freely available. The platform consists of the Medical Imaging Toolkit (MITK) and the 3-Dimensional Medical Image Processing [...]

BioImage Suite: An integrated medical image analysis suite: An update
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BioImage Suite is an NIH-supported medical image analysis software suite developed at Yale. It leverages both the Visualization Toolkit (VTK) and the Insight Toolkit (ITK) and it includes many additional algorithms for image analysis especially in the areas [...]

A programming environment for the development of modular 3D biomedical image processing applications
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ImageLib is a free object-oriented development environment destined to biomedical image processing. The software package contains a programming library (C++ language) and an MDI user interface (kernel). The major interest is to allow the creation of fully [...]

MATITK: EXTENDING MATLAB WITH ITK
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To facilitate the analysis of medical image data in research environment, MATITK is developed to allow ITK algorithms to be called in MATLAB. ITK is a powerful open-source image analysis toolkit, but it requires the knowledge of C++ to use it. With the help [...]

How to use the itk::NaryElevateImageFilter and itk::UnaryRetractImageFilter for the post-processing of medical 4D data
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The subject of the paper is to introduce a new class of 4D filters to itk.While it is very easy to load a 3D volume stored as a series of DICOM images with ITK, some convenience functions that are already available for 3D volumes are not yet available for the [...]

A new Gray-Level Picture Thresholding method for colonoscopic navigation
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In this paper, we propose a vision based navigation system to guide an endoscope inside human colon. The target to pursue is a dark spot on colonoscopic images, called “pattern”. A novel methodology for "pattern" extraction and tracking was designed. [...]

VascuSynth: Vascular Tree Synthesis Software
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In previous work, we presented an algorithm to synthesize volumetric images of vascular trees and generate the corresponding ground truth segmentations, bifurcation locations, branch properties, and tree hierarchy. In this work, we provide the software needed [...]

An Intelligent cluster-based segmentation using Wavelet Features:Application to Medical Images
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Segmentation forms the onset for image analysis especially for medical images, making any abnormalities in tissues distinctly visible. Possible application includes the detection of tumor boundary in SPECT, MRI or electron MRI (EMRI). Nevertheless, tumors [...]

Kinematics Based Safety Operation Mechanism for Robotic Surgery extending the JHU SAW Framework
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As robotic surgery gains popularity [1, 2, 3], methods for improving situational awareness during tele- operation have become an active area of research. Literature has attempted to incorporate haptic feedback displays to enhance and improve user performance. [...]


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